Abstract Publications
2019
Zhang K, Schumacher L, Grabau Zane, Maltais-Landry G, Wright D, Small I, Liao H-L. 2019. Disentangling the nematode-microbiome interactions underlying sod-based rotation and their potential consequences on soil nutrient cycling. SSSA International Soils Meeting. San Antonio, TX, USA (Abstracted submitted)
Chen K-H, Vilgalys R, Hoeksema Plett J, Anderson I, Powell J, Rojas A, Liao H-L. 2019. Anthropogenic pine-ectomycorrhizal fungi co-introduction altering root and soil microbiome assemblies across a California-Australia invasion gradient. 30th Fungal Genetics Conference, Pacific Grove, CA, USA (Oral presentation). Abstract: PgmNr 43/573T. https://eventpilotadmin.com/web/page.php?page=IntHtml&project=FGC19&id=195410648
Chen K-H, Florencia Marcón F, Duringer J, Blount A, Liao H-L. 2019. Fungal endophytes and mycotoxin of warm-season grasses in Florida pastures. 30th Fungal Genetics Conference, Pacific Grove, CA, USA (Poster presentation). Abstract: PgmNr 566W. https://eventpilotadmin.com/web/page.php?page=IntHtml&project=FGC19&id=195410717
Liao H-L, Branco S, Bruns T, Singan V, Barry K, Grigoriev I. Vilgalys R. 2019. Mutualistic coevolution mediating population level biodiversity of symbiotic fungi and symbiosis efficiency. 30th Fungal Genetics Conference, Pacific Grove, CA, USA (Poster presentation). Abstract: PgmNr 845W. https://eventpilotadmin.com/web/page.php?page=IntHtml&project=FGC19&id=195410606
Chen K-H, Vilgalys R, Hoeksema Plett J, Anderson I, Powell J, Rojas A, Liao H-L. 2019. Anthropogenic pine-ectomycorrhizal fungi co-introduction altering root and soil microbiome assemblies across a California-Australia invasion gradient. 30th Fungal Genetics Conference. PgmNr 43/573T. https://eventpilotadmin.com/web/page.php?page=IntHtml&project=FGC19&id=195410648
Lofgren L, Vilgalys R, Nguyen N, Ruytinx J, Liao H-L, Kennedy P. 2019. Genomic signatures of ectomycorrhizal host specificity. 30th Fungal Genetics Conference. PgmNr 468T. https://eventpilotadmin.com/web/page.php?page=IntHtml&project=FGC19&id=195410417
Guerra V (&), Beule L(v), Liao H-L, Mackowiak C, Dubeux J, Blount A, Rowland D. 2019. Soil microbial community response to nitrogen management in Florida pastures. International Soil Meeting (SSSA)
2018
Liao H-L. 2018. Functional diversity of forest microbiomes and their consequences. International Mycological Congress (IMC11), Puerto Rico, USA. Abstract: S37-1.
Liao H-L, Branco S, Nguyen N, Kennedy P, Bruns T, Hsu C-M, Chen K-H, Kuo A, Barry K, Grigoriev I, Hoyt DW, Tappero R, Vilgalys R. 2018. Mutualistic coevolution mediating species and population level biodiversity of ectomycorrhizal fungi (Oral presentation) International Mycological Congress (IMC11), Puerto Rico, USA. Abstract: S28-5. https://cslide-us.ctimeetingtech.com/msa18/attendee/confcal/presentation/list?q=Liao
Rojas J, Looney B, Hameed K, Liao H-L, Bonito G, Gregoriev I, Barry K, Schadt C, Labbe J, Jacobson D, Ellis C, Martin F, Vilgalys R. 2018. Genomics of endophytic fungi associated with Populus roots. 30th Fungal Genetics Conference. PgmNr 504T. https://eventpilotadmin.com/web/page.php?page=IntHtml&project=FGC19&id=195410682
Chen K-H, Liao H-L, Korotkin H, Wu S, Matheny P, Lutzoni F. 2018. Differential gene expression linked to fungal trophic switches (symbiotrophism and saprotrophism) using the moss Dicranum scoparium and its associated fungi. International Mycological Congress (IMC11) S3.1-23. https://cslide-us.ctimeetingtech.com/msa18/attendee/confcal/presentation/list?q=Liao
Branco S, Bi K, Liao H-L, Gladieux P, Badouin H, Ellison C, Nguyen NH, Vilgalys R, Peay KG, Taylor JW, Thomas D. Bruns TD. 2018. Environmental adaptation in Suillus brevipes (Boletales). International Mycological Congress (IMC11): S28-4 https://cslide-us.ctimeetingtech.com/msa18/attendee/confcal/presentation/list?q=Branco&c=s
Ke Y, Branco S, Rojas A, Hameed K, Grigoriev I, Kuo A, Barry K, Liao H-L, Nguyen N, Kennedy P, Bruns T, Vilgalys R. 2018. Mating genes evolution and population genetics in Suillus brevipes. International Mycological Congress (IMC11). S1.1-172. https://cslide-us.ctimeetingtech.com/msa18/attendee/confcal/presentation/list?q=1.1-172&c=pnr
Rojas A, Ke Y, Hameed K, Cotter H, Liao H-L, Nguyen N, Kennedy P, Vilgalys R. 2018. Host range and specificity of ectomycorrhizal genus Suillus with different Pinaceae hosts. International Mycological Congress (IMC11): S28-6. https://cslide-us.ctimeetingtech.com/msa18/attendee/confcal/presentation/list?q=Rojas&c=s
Schumacher L, Grabau ZJ, Liao H-L, Wright DL, Small IM. 2018. Vertical distribution and population dynamics of Rotylenchulus reniformis life stages in peanut-cotton cropping systems. Journal of Nematology. 50(4), 655-655.
Averill C, Liao H-L, Vilgalys R, Chen K-H(p), Bandy R, Bhatnagar J. 2018. The ectomycorrhizal fungus Suillus cothurnatus and nitrogen fertilization have strong and interactive effects on ecosystem processes. Ecological Society of America Meeting (ESA), S345. https://eco.confex.com/eco/2018/meetingapp.cgi/Paper/7079011.
Rojas A, Liao H-L, Bonito G, Hameed KM, Grigoriev I, Schadt C, Labbe J, et al. 2018. Genomics of endophytic fungi associated with Populus roots (Poster). International Congress of Plant Pathology (ICPP): Plant Health in A Global Economy
Nguyen NH, Liao H-L, Ruytinx J, Branco S, Certano A, Lofgren L, Rojas A, Cotter HVT, Kuo A, Barry K, Grigoriev I, Bruns T, Vilgalys R, Kennedy P. 2018. A genome atlas of the ectomycorrhizal genus Suillus: Phylogenetic diversity and population genomics of a keystone guild of symbiotic forest fungi (Abstracted for the poster). JGI Genomics of Energy and Environment meeting (DOE-JGI User Meeting).
2017
Liao H-L, Talbot JM , Bruns TD, Taylor JW, Peay KG, Branco S, Kuo A, Barry K, Grigoriev I, Hoyt DW , Nicora CD, Purvine SO, Velickovic D, Anderton CR, Chu R, Rasa-Tolic L, Vilgalys R. 2017. Unraveling the core mechanisms of Suillus-Pinus symbiosis using integrated omics (Oral presentation). Mycological Society of America (MSA), Athens GA, USA. Abstract: TUES 8.
Liao H-L, Kuo A, Barry K, Grigoriev I, Hoyt DW, Nicora, CD, Purvine SO, Talbot JM, Bruns TD, Taylor JW, Peay KG, Branco S, Vilgalys R. 2017. Unraveling the core mechanisms of Suillus-Pinus symbiosis through time-course RNAseq and omics (Oral presentation). JGI Genomics of Energy and Environment meeting (DOE-JGI User Meeting), Walnut Creek, USA
Rojas A, Liao H-L, Bonito G, Hameed KM, Busby PE, Grigoriev I, Schadt C, Labbe J, Tuskan G, Vilgalys R. 2017. Endophytic fungi associated with Populus roots: The Ilyonectria complex. Phytopathology. 107 (12), 10-10.
Rojas-Flechas JA, Liao H-L, Ke Y-H, Bonito G, Hameed K, Schadt C, Labbé J, Vilgalys R. 2017 Endophytic fungi associated with Populus roots. Mycological Society of America (MSA). MON 34. http://www.msafungi.org/Portals/0/Inoculum%20September%202018/Abstracts%20for%202017%20meeting.pdf
Ke Y-H, Branco S, Rojas-Flechas JA, Hameed K, Grigoriev I, Kuo A , Barry K, Senchenkov A , Liao H-L, Nguyen N, Kennedy P, Bruns T, Vilgalys, R. 2017. Mating system and mating gene evolution in Suillus brevipes. Mycological Society of America (MSA) TUES 9. http://www.msafungi.org/Portals/0/Inoculum%20September%202018/Abstracts%20for%202017%20meeting.pdf
Chen K-H, Liao H-L, Korotkin HB, Matheny PB, Lutzoni F. 2017. Functional ecology of mycobiome shifts associated with plant senescence - linking environmental and experimental re-synthesis metatranscriptomics. XIX International Botanical Congress. T5-05-12. http://www.ibc2017.cn/Download/
Rojas-Flechas JA, Liao H-L, Ke Y-H, Bonito G, Hameed K, Schadt C, Labbé J, Vilgalys R. 2017. Endophytic fungi associated with Populus roots. Mycological Society of America (MSA).
Ke Y-H, Branco S, Rojas-Flechas JA, Hameed K, Grigoriev I, Kuo A, Barry K, Senchenkov A , Liao H-L, Nguyen N, Kennedy P, Bruns T, Vilgalys, R. 2017. Mating system and mating gene evolution in Suillus brevipes. Mycological Society of America (MSA)
Rojas-Flechas JA, Looney B, Liao H-L, Chen J, Labbe J, Vilgalys R. 2017. Plant-Microbe Interfaces: Characterizing the diversity and function of the ectomycorrhizome of Populus trichocarpa. DOE GTL Meeting (Contractors Meeting)
2016
Liao H-L, Hoyt DW, Nicora CD, Purvine SO, Talbot JM, Bruns TD, Taylor JW, Peay KG, Branco S, Kuo A, Barry K, Grigoriev I, Vilgalys R. 2016. Unraveling the core mechanisms of Suillus-Pinus symbiosis through integrated metaomics (Poster). EMSL’s (Environmental Molecular Sciences Laboratory) annual science meeting, Richland, WA USA
Liao H-L. 2016. Dynamics of plant-soil microbiome interaction: integrated metaomic approaches. (Invited, Oral presentation) 3rd International Conference on Biotechonology and Biodiversity (II CIBB), Guayaquil, Ecuador
Liao H-L, Bonito G, Hameed K, Grigoriev I, Schadt C, Labbe J, Tuskan G, Tschaplinski T, Martin F, Vilgalys R. 2016. Metagenomic study of plant-fungal interactions between Populus trichocarpa with its rhizosphere fungi. 13th European Conference of Fungal Genetics (ECFG13), Paris-La Villette, France.
Liao H-L, Bonito G, Hameed K, Grigoriev I, Schadt C, Labbe J, Tuskan G, Tschaplinski T, Martin F, Vilgalys R. 2016. Metagenomic study of plant-fungal interactions between Populus trichocarpa with its rhizosphere. 13th European Conference of Fungal Genetics (ECFG13). Page 81. http://www.fgsc.net/ecfg13/ECFG13.pdf
Liao H-L, Chen Y, Bruns TD, Peay KG, Taylor JW, Branco S, Talbot JM, Grigoriev I, Barry K, Hoyt DW, Nicora CD, Purvine SO, Chen K-H, Vilgalys R. 2016. Common and unique (host-specific) genes involved in ectomycorrhzal symbiosis between Pinus and Suillus. 13th European Conference of Fungal Genetics (ECFG13), Page 225. http://www.fgsc.net/ecfg13/ECFG13.pdf
Chen K-H, Liao H-L, Arnold AE, Lutzoni F. 2016. Metatranscriptomic analysis of the moss Dicranum scoparium reveals active fungal communities and functionalities across a senescence gradient. Mycological Society of America (MSA).
Chen K-H, Liao H-L, Arnold AE, Lutzoni F.2016. Metatranscriptomic analysis of the moss Dicranum scoparium reveals active fungal communities and functionalities across a senescence gradient. Botany conference. C4008-300. http://2016.botanyconference.org/engine/search/index.php?func=detail&aid=300
Liao H-L, Bonito G, Hameed K, Rojas-Flechas A, Schadt C, Labbé JL, Tuskan GA, Grigoriev I, Martin F, Vilgalys R. 2016. Metagenomic study of plant-fungal interactions between Populus trichocarpa with its rhizosphere fungi. Environmental Molecular Sciences Laboratory (EMSL) annual science meeting.
2015
Liao H-L et al. 2015. Comparative omics reveal core symbiotic genes of ectomycorrhizal fungi. 8th International Conference on Mycorrhiza (ICOM), CS9-3. Page 108. https://www.nau.edu/uploadedFiles/Centers-Institutes/Merriam-Powell/ICOM8/_Forms/Abstracts_Index_7_26.pdf
Liao H-L, Chen Y, Bruns TD, Peay KG, Taylor JW, Branco S, Talbot JM, Vilgalys R. 2015. Metatranscriptomic analysis of ectomycorrhizal functioning in pine forest soils. 28th Fungal Genetics Conference, Page 52.
Chen K-H, Liao H-L, Arnold AE, Lutzoni F. 2015. Using metatranscriptomics to characterize functional shifts in endophytic fungi at plant senescence: Are endophytic fungi latent saprotrophs? 28th Fungal Genetics Conference S463: Page 206
Liao H-L, Greene G. 2015. Prediction of SSPs involved in Suillus mutualism interactions. 28th Fungal Genetics Conference S477: Page 210.
Chen K-H, Liao H-L, Arnold AE, Lutzoni F. 2015. Using metatranscriptomics to characterize functional shifts in endophytic fungi at plant senescence: Are endophytic fungi latent saprotrophs? BSA-MSA-ASPB Joint meeting.
2014 and before
Liao H-L, Bruns TD, Peay KG, Taylor JW, Branco S, Talbot JM, Smith D. Vilgalys R. 2014. Genetics of host-specificity and function in mycorrhizal fungi. The 10th International Mycological Congress. S15
Liao H-L, Bruns TD, Peay KG, Taylor J, Branco SD, Talbot JW, Smith D, Vilgalys R. 2013. Host-specific relationships between Suillus and Pinus species. Phytopathology. 103 (6), 82-82. https://apsjournals.apsnet.org/doi/pdf/10.1094/PHYTO-103-6-S2.1
Liao H-L, Bruns TD, Peay KG, Taylor JW, Branco S, Talbot JM, Smith D, Vilgalys R. 2014. Metatranscriptomic analysis of ectomycorrhizal (EM) roots reveals genes associated with EM fungal-P. taeda symbiosis. 2nd International Conference on Biotechonology and Biodiversity (II CIBB)
Gryganskyi AP, Liao H-L, Humber RA, Stajich, JE, Mullens B, Anishchenko IM, Vilgalys R. 2013. Sequential utilization of hosts from different fly families by the fungal pathogen Entomophthora muscae. Phytopathology. 103(6), S2.53. https://apsjournals.apsnet.org/doi/pdf/10.1094/PHYTO-103-6-S2.1
Liao H-L, Chen Y, Bruns TD, Peay KG, Taylor JW, Branco S, Talbot JM, Vilgalys, R. 2013. Metatranscriptomic analysis of ectomycorrhizal root clusters in Pinus taeda: new methodologies for assessing functional gene expression in situ. 27th Fungal Genetics Conference. S314, Page 41; Page 197 http://fungalgenetics.org/2013/documents/FungalProgramBook2013.pdf
Gryganskyi AP, Bonito G, Rodriguez-Carres M, Porter TM, Chen Y, Robb S, Liao H- L, et al. 2013. Genome based phylogeny of early diverging fungal lineages (Poster). 27th Fungal Genetics Conference. S305, Page 195. http://fungalgenetics.org/2013/documents/FungalProgramBook2013.pdf
Bai J, Baldwin E, Liao H-L, Kostenyuk I, Burns JK, Irey M. 2013. Extraction of DNA from orange juice and detection of 16S DNA of Candidatus Liberibacter asiaticus by quantitative real-time PCR. 3rd International Research Conference on Huanglongbing
Alferez F, Liao H-L, Burns JK. 2012. Postharvest blue light treatments affect citrus fruit susceptibility to disease by altering oxylipin biosynthesis. International Citrus Congress.
Alferez F, Liao H-L, Burns JK. 2012. Light from different wavelengths affects expression of genes encoding phospholipases A2 and D in peel from mandarins at different maturation stage during postharvest storage. International Symposium on Light in Horticulture
Bai J, Baldwin E, Liao H-L, Kostenyuk I, Burns JK, Irey M. 2012. Detection of 16S rDNA of Candidatus Liberibacter asiaticus by quantitative real-time PCR. Florida State Horticultural Society Meeting. 125, 233-23
Bai J, Baldwin E, Liao H-L, Kostenyuk I, Burns JK, Irey M. 2012. Reference gene selection, primer design and amplification interference of quantitative real-time PCR in tomato and orange subjected to environmental and disease stress. Annual Meeting of the Florida State Horticultural Society. https://fshs.org/wp-content/uploads/2015/05/FSHS-2012-Abstracts.pdf
Bai J, Liao H-L, Baldwin E, Kostenyuk I, Burns JK, Irey M. 2012. Extraction of DNA from orange juice and detection of 16S DNA of Candidatus Liberibacter asiaticus by quantitative PCR. Postharvest Pest Control Conference.
Rodriguez-Carres M, Bonito G, Porter TM, James TY, Liao H-L, Vilgalys R. 2012. Construction of Illumina sequencing libraries for fungal phylogenomics and community metagenomics from nanogram amounts of nucleic acid. DOE Joint Genome Institute User Meeting.
Liao H-L, Burns JK. 2011. Gene expression in Citrus sinensis fruit tissues harvested from Huanglongbing-infected trees: Comparison with girdled fruit. 2nd International Research Conference on Huanglongbing
Liao H-L, John-Karuppiah KJ, Burns JK. 2010. Premature Fruit Drop due to Huanglongbing Infection in Citrus sinensis Is Predicted by Cell Wall Hydrolase Gene Expression. Hortscience. 45 (8), S76-S77
Rosales R, Liao H-L, Burns JK. 2010. Phytohormone changes and carbohydrate status in HLB-affected Valencia fruit (Citrus sinensis) through fruit development and maturation: 28th Implications in fruit symptomatology. International Horticultural Congress.
Liao H-L, Rosales R, Burns JK. 2009. Transcriptome changes associated with mature fruit fractions of Huanglongbing-infected Citrus sinensis. 2nd International Citrus Biotechnology Symposium.
Rosales R, Liao H-L, Burns JK. 2009. IAA, ABA and ethylene content and related gene expression are altered in mature fruit fractions of Huanglongbing-infected Citrus sinensis. 2nd International Citrus Biotechnology Symposium
Liao H-L, Chung K-R. 2006. Molecular and biochemical characterizations of elsinochrome toxins produced by Elsinoe fawcettii causing citrus scab. Phytopathology 96 (6), S186-S186
Liao H-L, Chen H, Chung K-R. 2006. Plant hormone inhibitors for reducing post-bloom fruit drop (PDF) of citrus. Proc. Fla. State. Hort. Soc. 119: 78-81.