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metatranscriptomics
NGS Tools
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Illumina sequence
DNAseq_Summary
RNAseq_Quality Trimming
RNAseq_Mapping-based assembly
RNAseq_De-novo assembly
RNAseq_Data Interpretation
Terminal-based information
Other useful tools
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Data Interpretation
Data normalization: RPKM; DEseq in R (v1.16.0
Instruction
);
Cufflinks (
manual
)
Annotation: BlastX
Statistic analysis:
Pathway network:
KEGG
;
ClueGO
;
Rstudio (
Download
)
Tutorials for other R packages:Plotting system (i.e.
ggplot2
); Heatmap; VocanoPlot